Table of all MAX representative Alphafold models

The table caption is at the bottom of this page
AF-MAX MMseqs2 CustomMSA JackHmmer BestScore PDB Name Sequence Core alignment (columns with less than 70% gaps only) Modeller TM-pred
MAX01
87.20
57.95
94.25
94.25
Triticum_Mo_B2_115880T0 --ECFWFMFYN-GQRVDAGACHSDWSFGLQVGKRFVQIKTDKKCNLHG--T-YAPGWIVLGRERD
OG01
0.87
MAX02
94.05
85.22
98.10
98.10
7A8X AVR-PikC Oryza_Mo_87_120_118150T0 --ECFWFMFKN-NVRQDDGTCYSSWKMDMKVGPNWVHIKSDDNCNLSG--D-FPPGWIVLGKKRP
OG02
0.91
MAX03
90.43
72.11
95.98
95.98
Brachiaria_Mo_Bd8401_113610T0 --DCFWFLYKN-YVRQDAGVCQSDWSFEMKIGQYWVTIHTDEGCRLSG--I-IPAGWLILGIKRL
OG03
0.84
MAX05
62.98
91.88
92.62
92.62
Oryza_Mo_87_120_068110T0 -ELCTIDILFR-GRRVTFRNIPSGSFQQTEVQGKRCIISVDDSCQPTQ-VG-LDQYWSVKLRE--
OG05
0.72
MAX06
92.56
70.31
91.65
92.56
2LW6 AvrPiz-t Oryza_Mo_87_120_117670T0 FVQCNHHLLYN-GRHWGTIRKKAGWAVRFYE-KRLAICKNSPHCYLKC-TN-LA-GFSGTSTDVL
OG06
0.99
MAX07
94.73
92.65
95.70
95.70
Triticum_Mo_12_1_205_023240T0 -LTCNLSINKD-GKYFKQEQAIAGREVKFKD-GNVGICKTTTNCRVTC-KD-LP-GYSGEAWDVK
OG07
0.72
MAX08
52.70
63.24
58.16
63.24
Oryza_Mo_87_120_064890T0 -FQCRITYTAPN-KKPVVNKLGHGGTAKLSVDGVTYTAVADAKCKLVVVGSPWP-AGHFTVGQVV
OG08
0.74
MAX09
58.03
61.02
45.31
61.02
Echinichola_Mo_IR0015_070470T0 -FECRITYTAPN-KKPVVNHLGYGGTAKLSVDGVTYTAVADAKCKLVIVGSPWP-AGHFTVGQVV
OG09
0.73
MAX10
56.30
91.21
63.66
91.21
Triticum_Mo_12_1_205_049140T0 -YKCRVYLKDGFDDSDDFQEGAPGDTVHLTANCDIIKVFIRDACYYDILNVEMPASYTIKTKKID
OG10
0.69
MAX11
91.02
95.65
93.22
95.65
Setaria_Mo_Arcadia_117730T0 -YKCRISLMNGSDSSDDYEDGKPGDTVNLQANGDIVKVYIRDNCYYDILNKEMPASYTIKTKRL-
OG11
0.75
MAX12
92.87
81.48
48.63
92.87
Lolium_Mo_CHRF_114940T0 --DCQVSLTATS---WDTQYADYNDDVEISAGRHKFVIHVEQDCGGSKVSGTIPPHHLVILSPMS
OG12
0.68
MAX13
93.74
79.56
55.02
93.74
Lolium_Mo_Br58_118190T0 --DCQVSLTATS---WDTQYADYNDDVEISAGRHKFVIHVEQDCGGSKVSGTIPPHHLVILSPMS
OG13
0.67
MAX14
91.14
81.44
76.88
91.14
Oryza_Mo_AG0004_119100T0 --DCQVSLTATS---WDTQYANYNDDVEISAGRHKFVIHVEQDCGGSKVSGTIPPHHLVILSPMS
OG14
0.68
MAX15
72.78
N.A.
87.88
87.88
Brachiaria_Mo_Bd8401_068860T0 TQWCKVELVKG-REPQGMVKQNWDKTFVIK----GFEFKLSHDCTIAG---EAA-GYAVLSAAYK
OG15
0.52
MAX17
94.79
80.43
93.72
94.79
Triticum_Mo_12_1_205_033830T0 GAKCRVDLKHG-QAVVSSFEVLAGSRKTVKEEGFSWTCSTQRTCDAVC-I--LPKGLTAVGVQIS
OG17
0.68
MAX18
80.26
66.16
62.05
80.26
Oryza_Mo_87_120_079830T0 -TDCIIRICK-GDKTIHAKFAPAGTEFDWYLDDRLTVLRLRSDCS-VS-G-YVPKPWKVQGDKVS
OG18
0.74
MAX19
93.16
95.32
93.23
95.32
Oryza_Mo_87_120_110330T0 --VCDFIIKQN-GTQITSGNIWAGATANFLVSGKWAVVSATSECKLSL-SG-LPNSYTILPTQ--
OG19
0.70
MAX20
82.84
88.17
73.73
88.17
Lolium_Mo_Br58_016220T0 EDGCSASILKYDQETYYGSALPANGSIAFP-EFGEVVISVDANCNPTN-DVKVPKGWGLHVYKKV
OG20
0.68
MAX21
90.28
91.98
61.73
91.98
Oryza_Mo_87_120_063950T0 -LGCTYSLYNIGRQLVSYAPVSPGGTIDYKIGRTTHKLKFADTCEFES-VPRLPDYWKVFGHVEG
OG21
0.72
MAX23
-----
-----
65.54
65.54
Stenotaphrum_Mo_SSFL02_117450T0 GFDCTIERRLG--AMPEMIPAESGKYTVIA----GTRVWVYGDCRTYP----LDG-STISGRAFQ
OG23
0.65
MAX24
46.14
85.71
47.38
85.71
Stenotaphrum_Mo_SSFL02_116130T0 -LGCEVFISKSGGDPIKSSCIPKSGSKVIVVNGKTVTVSADGSCKFSS-KD-LDPSLVMKFEGD-
OG24
0.79
MAX25
82.88
90.39
85.01
90.39
Echinichola_Mo_GN0001_113320T0 HYRCKFEVLHIWTEPFLSSFIDPGQRAEITIEKTDFAIDIDGECKGTKVAGRIPENWFIRLSREG
OG25
0.65
MAX27
-----
N.A.
62.52
62.52
Lolium_Mo_Br58_022860T0 RQQCFLSADLGP-PTLLETPFV-NDMFDHG-----YRCQMGKDCHVRC-RG-FPAAFKMTARNYP
OG27
0.64
MAX28
70.73
74.12
73.44
74.12
8C8A Lolium_Mo_Br58_067180T0 -TSCKLALTNGNKREVDAKLLPPSGTTILSDGAGVFTAKVNSKCEFTSVSPALPTGFKIEGSVDK
OG28
0.75
MAX29
62.66
64.14
63.09
64.14
Oryza_Mo_87_120_115900T0 PEHCFVRILK-YEIPIHGDGYLVGSDVNWWVGNQKVDFHINNDCTIQRR--DLPKGFDFILFRES
OG29
0.67
MAX30
59.28
56.01
60.99
60.99
Oryza_Mo_87_120_072540T0 VFGCFVRMSIVTSNSGDLIPTTNPGQVDFKDGSDTITVKLDKNCQPVI---KHRKEVQFNALQKL
OG30
0.61
MAX31
-----
74.49
-----
74.49
Oryza_Mo_87_120_115960T0 GDHCELTVWIHYDIPLMRYYVEIGGDLTFD-GAWHCVIKTTQACQATWTGGCPPKNINVDARKVI
OG31
0.62
MAX32
49.55
82.28
45.04
82.28
Brachiaria_Mo_Bd8401_036520T0 ARPCKVTISMAVRQIYGEGLTTRGGRVVI-E---SFKCTVDETCNPSC-PD-VPPTWQVTSYDVE
OG32
0.61
MAX33
95.31
93.42
96.15
96.15
6R5J MoToxB Lolium_Mo_Br58_090910T0 -TGCSVEIINSNQVSVGSGCARINSVTNIGDQGRRWGVLANSSCGLSTTQN-LPSGWSLRQTGF-
OG33
1.01
MAX34
88.83
63.68
67.08
88.83
Oryza_Mo_87_120_115840T0 WQWCIVTVFYQG-RS-TGEFPTAVRKYEFPGEKYPYKFVCDDQCKCVSAGPF-LTGMRLEGQHVP
OG34
0.66
MAX35
92.53
67.56
93.99
93.99
Setaria_Mo_Arcadia_116450T0 RGWCKVKVLYRHRKEAQATYAEIDKETHWNLDGFPIVIKPD-GCTIKLVSGWVDHEYYFKGETHK
OG35
0.69
MAX36
70.60
63.13
58.19
70.60
Stenotaphrum_Mo_SSFL02_031790T0 -NGCLVKILDG-QRSLGERCIFEGYVTVHAEY-R-SLANVQGDCRNKG--E-G----NLQVVPAQ
OG36
0.64
MAX37
90.86
91.72
91.72
91.72
Brachiaria_Mo_Bd8401_070610T0 VWECHVTVWEG-NTPRGTEMLKEGGDKTI-A---GYTCRAGAGCKAEC-DG-MNPPFRVLGTPHS
OG37
0.61
MAX38
85.07
50.55
83.53
85.07
Brachiaria_Mo_Bd8401_113550T0 AKLCKWTVLNSEGEIIESGSCLNTEYMKH----GDIHVEFENDCTPIIFGAVA-EKVTIKGEIEE
OG38
0.64
MAX39
89.55
83.47
87.25
89.55
Oryza_Mo_AG0004_119250T0 RRMCILALAEKNPSFLTFQEIEAPAAAMLSYGGHEIHFELDKNCWPRLRGSAVPPGYSAHIYS-E
OG39
0.62
MAX40
90.75
86.62
89.28
90.75
Triticum_Mo_12_1_205_116350T0 RRMCILALAEKTPNFLTFEEVEAPAAAMLSYGGHEIHFELDKNCWPRLRGSAVPSGYSAHVYS-D
OG40
0.63
MAX41
84.81
80.19
78.17
84.81
Brachiaria_Mo_Bd8401_117640T0 RRMCILTFAEKTPNFLTYQEVEAPAAAMLSYGGHEIHFELDKNCWPRLRGSAVPPGYSAHIYL-E
OG41
0.63
MAX42
88.18
81.81
87.84
88.18
Brachiaria_Mo_Bd8401_117480T0 RRMCMLALAETTPNFITLQEVQAPTAASISYGGHYIHLKLDKNCLPKLVGSSVPPGYSVHIFS-K
OG42
0.65
MAX43
-----
68.16
-----
68.16
Triticum_Mo_12_1_205_099660T0 VPVCLVQLLE-GDLFWKFYTARPGELYAFAID--SSFITAK-DCTIKDVHKKIRRRFTLKSFAAS
OG43
0.63
MAX44
75.89
57.37
61.78
75.89
Triticum_Mo_B2_097790T0 N-PCRIVIYKPGGEEYFMGSVAPGGVARFD----GYICKASKDCRPTC-FN-MPFGFRYFGRHMR
OG44
0.65
MAX45
91.08
75.76
86.63
91.08
Brachiaria_Mo_Bd8401_032890T0 PQLCKVEMFDNNARFVGMARGNWDKDFVI-K---GHTIKCNTRCETKD-VV-LPKNWSVKGYMIK
OG45
0.68
MAX46
87.70
85.58
88.66
88.66
Stenotaphrum_Mo_SSFL02_071710T0 -KNCKFNVLNGSGINVANGCCDVTKQVTVS----PFTVSCTESCGLAIVSG-GDPTFSLQNAGR-
OG46
0.70
MAX47
92.73
47.02
92.84
92.84
7ZKD Triticum_Mo_12_1_205_114780T0 RMCCDYKISP---GG-KSWSTKKGVQNWFHYKGKRYDVMAFDRCNLVWGRGEPK-KLTFEFGDRE
OG47
0.63
MAX48
48.83
56.96
85.03
85.03
Eleusine_Mo_B51_040130T0 ERVCQVTVFYGKETG-TLMLMEPEEPIVIPKIGKRYYAVSDANCKYKRYDPW-PSGLRVKGVAVN
OG48
0.67
MAX49
91.92
84.69
88.08
91.92
Oryza_Mo_87_120_054380T0 NPPCKVTIYAPPRTEMGFASAGKNEDVPVKITGHTYQCRTDATCEPVC-HG-LPNGWTYDGVYMH
OG49
0.67
MAX50
58.85
52.33
62.26
62.26
Oryza_Mo_87_120_116980T0 MKDCYYTVWTSN-GNSWLSIRD-KTSDHLGIHGASVYFDED--C-YPH--Y-HSKEILVRKGCHE
OG50
0.62
MAX52
58.26
45.78
66.02
66.02
Lolium_Mo_Br58_051980T0 --DCGISIFRPPGALAEVIYVNRGETFKI-I--EGYTCSVEQNCRPDC-N--LPRTWNYRGQWG-
OG52
0.63
MAX53
90.78
83.28
79.25
90.78
Triticum_Mo_12_1_205_115630T0 NEDCIVSLVPDGSFARKTLRSSPGQQHDLQWGKYAFTIRVENGCAGKKTAGTIPPAHFVSVGRAA
OG53
0.71
MAX55
72.21
86.71
79.31
86.71
Eleusine_Mo_B51_023380T0 -HFCKVSVYYQDRYQSTKKFAVPPAKVRILVGSRMHEVTVDKACKRTGWNGFLPRGYTIETEGWR
OG55
0.68
MAX56
90.69
95.38
90.46
95.38
Brachiaria_Mo_Bd8401_049230T0 KWRCNVKIYNDKGKYQGQASDDWGETLTI-R---GYTCYTDSYCKASC-DG-LPAGWTAEGTQLN
OG56
0.68
MAX57
37.45
63.41
58.51
63.41
Echinichola_Mo_GN0001_111790T0 KDFCRLTLKKG-DEIQSQKWVAKPGPIGILIQPVYESFKTDKYCNPKVRRGKLPDGYTFHGELKY
OG57
0.69
MAX58
91.77
84.57
94.98
94.98
Eleusine_Mo_B51_116520T0 -PYCEYYIKT-L-GWE-LGWVKIGGQDELTWKGDSIGVKAEDNCKVVLV--------WLTAVPS-
OG58
0.80
MAX60
83.84
88.40
88.06
88.40
7ZK0 Triticum_Mo_12_1_205_115240T0 --DCTVIFRNNA-PP-IVVHTYYSRDLPIELDGVRHTIQLSG-CTPEQ----P-QGYSVEHMTYK
OG60
0.69
MAX61
93.51
N.A.
95.57
95.57
Triticum_Mo_12_1_205_116640T0 ---TEVTILKK-GERIAWVTVEPGSSKSVNIRGKYFTVSVSDSGEKSI-S--G-S-YSVE-----
OG61
0.86
MAX62
90.87
N.A.
95.16
95.16
5Z1V AVR-Pib Echinichola_Mo_GN0001_114110T0 ---TQVTILKK-GERITWVEVPKGESRVFNIRGKSVTVSVSDDGTPSI-S--G-S-FTVE-----
OG62
0.91
MAX63
91.97
88.96
91.66
91.97
Oryza_Mo_87_120_074600T0 ARLCTVQIMRD-YHTVAYKKIF-PFKFKWEIHGVTYNVEVLYECAAKIYKPALPDGLIIKGHIEG
OG63
0.67
MAX64
83.14
81.49
74.20
83.14
Lolium_Mo_Pg1213_22_115930T0 --KCVIGLTFN-N-WVNRFVISPGGKFSFIANYVIIPVRLDESCHWHQD-VIIPTGYGIKSCDEG
OG64
0.65
MAX66
75.29
84.11
62.81
84.11
Lolium_Mo_Br58_073460T0 -DKCIVQLLDATEEIVMERFSGFGMWDSVSYLGHTYQFRLDQDCK-TGD--------SVKFRKVR
OG66
0.65
MAX67
88.63
91.23
91.79
91.79
7ZJY Echinichola_Mo_GN0001_115030T0 -ADCTIGCKYL--WVHVSKTANIGDTLYIM----GHSTKIGRGCTPET----WD--AEIYSW---
OG67
0.66
MAX69
67.36
70.76
71.42
71.42
Lolium_Mo_Br58_118830T0 G-DCFMGLYET-GNHIIGQETDDSGKFKYRLDGWILHVTVD-KCKLKY-SGLVPWGYELRVFPSV
OG69
0.63
MAX70
90.52
89.70
91.37
91.37
Eragrostis_Mo_G17_016110T0 ARDCRLYYCWG-PNRRVVGTVDRGGSLKDYVNGQTITVKAGNDCKAEVIGGSVASGYYYEGFTTA
OG70
0.69
MAX72
47.79
88.07
87.11
88.07
Oryza_Mo_87_120_117680T0 -KGCPYSVRRY-DKEVKWDIVEAGKSHIRVIDGYPATISADQDCKLKI-KG-L-AKYTIAPGD-P
OG72
0.69
MAX74
56.60
63.53
62.78
63.53
Setaria_Mo_Arcadia_118280T0 -YECYVSLKING-IEHYEGRMEFPATTVYDIGGGTVVIVLGDTCEPIYKTEL---DFSSRIFKKR
OG74
0.64
MAX75
86.65
70.03
86.17
86.65
Setaria_Mo_Arcadia_088500T0 -NDCEVRIFSDKIQPLDRFFITPGLETHYIINQYPVSFLAPKGCEAAIT-GKLPPTYGVLISTKS
OG75
0.69
MAX76
84.05
60.31
90.30
90.30
Lolium_Mo_Br58_118470T0 -IFCLVQMCEMLKDCTRWYKVYPGGSHTFQEDRDTITVTFDNKCKKSLSGS-TKRSIGFPTQVVY
OG76
0.67
MAX78
-----
74.36
-----
74.36
Triticum_Mo_12_1_205_033750T0 --DCTINVADGDGRIVDTRQTFNGSLAIAHVNDKDVPLTVNADCTVGS-ND-LPAGFKASGFPT-
OG78
0.71
MAX80
-----
78.34
-----
78.34
Brachiaria_Mo_Bm88324_068560T0 KAKCPYTVFMPQWTKTREDEADADSEEQIR----FAKVKFAADCKISN--S-AK--LLFVKN---
OG80
0.62
MAX82
93.63
95.96
94.93
95.96
Oryza_Mo_BN0019_047960T0 --ECQWFLKNKVGNTVHTNYIKEGASQTWTVQDIPITFTVDKNCRKVT-KPDLPEGFTATARTRL
OG82
0.72
MAX83
94.18
79.14
93.20
94.18
Setaria_Mo_Arcadia_074170T0 AWYCKLYLMEG-QVIQSELWTKLGSPVELLTMPISQPIKTDNNCNPIIKRGSLQKEYMITGSKQK
OG83
0.67
MAX84
-----
-----
67.28
67.28
Stenotaphrum_Mo_SSFL02_017760T0 KHKCFIDIWKQEESLSLSVAKNPGESYWFKQGGSFTLITIDDDCDASLRFGKMPPRFFFEGRENY
OG84
0.60
MAX86
-----
73.97
-----
73.97
5ZNG AVR1-Co39 Triticum_Mo_B2_117270T0 WKDCIIQRYK-DGDVNNIYTANRNEEITIE----EYKVFVNEACHPYPVILSG---DFTSAYADD
OG86
0.90
MAX88
91.75
91.27
91.33
91.75
Oryza_Mo_87_120_118270T0 -KRCDVGIYNS-GGPRAYKNII-QWDFDFEYGGVTYTVRLHYECRTEIIGPQLPSHLIIRGSSPW
OG88
0.67
MAX89
80.09
50.29
88.56
88.56
Triticum_Mo_12_1_205_116870T0 -NNCEVSVRDKSGTEVAHACIKAGGSKNV-G---GAVVSTSNKCVVST-T--S-K-LTAVHVGG-
OG89
0.63
MAX90
92.99
85.55
93.66
93.66
Triticum_Mo_12_1_205_116380T0 -GPCRIYIDGPFYPSYGHAETSPGGSVVI-E---QFRCTVDATCRPT--CN-IPSNFMVSGMDLS
OG90
0.65
MAX91
95.28
58.09
94.70
95.28
Brachiaria_Mo_Bm88324_114700T0 KKICHYSIQKLTWYQVGTGQADAGKDTHIE----GTKVFFSNQCLPQW--N-NR--LYIKLDSEE
OG91
0.60
MAX92
84.18
N.A.
85.71
85.71
Echinichola_Mo_IR0088_113040T0 -YCCKYTIMP---GD-RVWIVKSGIEYMFEHNGKKYNVMAYDKCNLVWPAGGPE-GLTFEYERWP
OG92
0.53
MAX93
86.84
67.73
93.03
93.03
2MYW AVR-Pia Brachiaria_Mo_Bd8401_118010T0 -AFCVYYDGH---TRV-LMYVRIGTTATITARGHEFEVEAKDNCKVILT--------WLAAEPY-
OG93
0.97
MAX100
70.30
70.30
Oryza_Mo_MGG_04735T0 WWRCQVALIEHVKVEVGKVVTEIGSLHNVQLK-GYVRFKTRQNCYPDIIEGF--RRWTVVTTKVP
MAX101
62.60
62.60
Oryza_Mo_MGG_05896T0 PALCHVVIVKPATWVETFAWVKAGKVVEWHSK-GSVKVKTDDDCHLTFLVNELI-GYTCQLSR--
MAX102
96.30
96.30
Oryza_Mo_MGG_07348T0 TKMCQTSLLSSTGVVVRTMSLVPGEDNLFSYPEHVITVKPSKLCKPSITEGGIPEGWKWKYMKV-
MAX103
82.80
82.80
Oryza_Mo_MGG_09425T0 PAECEYTVYRNTYSFSHHGKAAKNSKQNIF----GVKVRFDRECRPHY-SS-KQ--IAVIPGI--
MAX104
89.30
89.30
Oryza_Mo_MGG_10120T0 NSDCHIWIKDNSDIVVGYSKAVTGQTAVVEIKKEQFKFATAADCTAGLARS-FPAGWRIKTFKT-
MAX105
64.10
64.10
Oryza_Mo_MGG_14600T0 -DGCLVEITEKTGGKSGNDCLPFGSQRPISVTTINLNVSGSKKCKTKVELGPLPDNAVISAFSAV
MAX106
82.70
82.70
Oryza_Mo_MGG_15443T0 DNGCMVTVHQPKGKLMGHKCILFGHSEEV-A--G-RYVTVPKHCDIRA-D--FPSGWYTVGTLA-
MAX107
84.20
84.20
Oryza_Mo_MGG_15911T0 -KDCVVRLGT-SSGDSVTKCIKRGSSGELRTDGDVVNFVTDDKCNPSVAST-LPPTKVLDVARM-
MAX108
84.40
84.40
Oryza_Mo_MGG_16475T0 -RICKVGIYRAAWRLRAARKII-PMQFQWDYKEATYKVELHYECEAKVVGQKLPAYLTIKGTISE
MAX109
74.80
74.80
Oryza_Mo_MGG_17249T0 -RPCFVALSKDG-EFV-VHEIQGPGEVTMEVAHYKFKIKLDGNCFPTVV-NHIPHGHEVSVYG--
MAX110
89.60
89.60
Oryza_Mo_MGG_17266T0 PINCVVVLRFRATQMVQSRLVPAGDSTRFKLGNQSYLVFTGRDCTVVPAGGQLPAEYYFFGMPSP
MAX111
91.90
91.90
Oryza_Mo_MGG_17601T0 -IGCNVRLIETDESTIEEKPISPSGTQTFQYGKDNIYVGVNKLCEVMEARG-LRDMTHLEFDITV
MAX112
74.90
74.90
8R7A PWL2 Oryza_Mo_MGG_04301T0 GGWTNKQFYNDKGRE-GSISIRKGSEGDFNYGDRMVRVHENN-GNIRG---MPP-GYSLGDE-R-

The above table lists the validated AlphaFold models of all representative MAX proteins. This table has of the following columns: - AF-MAX: Alphafold model identifier. MAX with identifiers <100 correspond to secreted proteins selected as reference sequences of putative MAX effector orthogroups (OGs) identified in the Pyricularia oryzae pangenome by Le Nahour-Vernet et al. 2023 and validated as MAX effectors by Lahfa et al., 2024. MAX with identifiers >100 are additional MAX effectors from P. oryzae strain 70-15 as listed in Table S8c of Lahfa et al., 2024. - MMseqs: pLDDT score of the best Alphafold model obtained using a MMseqs-based alignment - CustomMSA: pLDDT score of the best Alphafold model obtained using a custom alignment of MAX cores - JackHmmer: pLDDT score of the best Alphafold model obtained using a JackHmmer-based alignment - BestScore: best of the 3 previous pLDDT scores - PDB: identifier pointing to the corresponding Protein Data Bank entry - Name: protein name - Sequence: sequence identifier concatenating the plant host, P. oryzae isolate and gene identifier of the modeled MAX protein. - Core alignment: structural alignment of MAX models built using mTM-align (Dong et al. 2018). Aligned positions with more than 70% gaps are not displayed. - Modeller: link to a web page showing the 3D model page of the corresponding OG built in our previous study (Le Nahour-Vernet et al. 2023) - TM-pred: predicted TM-score of the Modeller model Each Alphafold model can be displayed in a separate HTML page by clicking on the MAX ID in the first table column. At the top of this new page, the full and modeled sequences of the MAX proteins are aligned with their two most similar MAX models according to TM-align. The sequences of the 3 corresponding OG groups are also included in the multiple sequence alignment. For each OG group the reference sequence that corresponds to the AF MAX model is indicated with "r" following the OG identifier. Below these MAX sequences, the following structural and conservation information are encoded in aligned sequences with the following suffixes: - id.S2D: identifiers of each regular secondary structure segments of the model. The 6 beta strands forming the conserved MAX core named from a to f and indicated in lower cases colored as in Figure 7b of Lahfa et al., 2024. Structural elements adding to the MAX core are not colored and indicated in capital letters for helices and in lower cases for beta strands. - 2d.STRIDE: secondary structure calculated by STRIDE (Frishman & Argos 1995) (H = helix, E = extended beta strand, C = coil, T=turn, G=3-10 helix) - ac.STRIDE: solvant accessibility percentage of each residue sidechain calculated by STRIDE (0 = 0% to 10%, ..., 9 = 90% to 100%) - ih.AASCALE: amino acid hydrophobicity index (Ponnuswamy et al. 1980) (0 = most polar, ..., 9 = most hydrophobic) - el.SURFMAP: electrostatic evaluation calculated by SURFMAP (Schweke et al.2022) (values normalized between 0 and 9) - st.SURFMAP: stickiness evaluation calculated by SURFMAP (values normalized between 0 and 9). - sc.CONSERV: positional amino acid conservation within one, two, or three OG groups (0 = 0% to 10%, ..., 9 = 90% to 100%) At the bottom of the page, the MAX model structure is displayed using Jmol. Its two most similar MAX models can be superposed onto the structure by checking their corresponding identifiers in the bottom right panel. The superimposed 3D files can be downloaded by clicking on the MAX IDs in the bottom right panel. Various display modes and color schemes can be chosen using the 2 popup menus in this panel. The model structures can also be colored according to one of the aligned strings of the upper right panel (sequence, structure, conservation or SURFMAP information) by clicking on the corresponding identifier in the upper left identifier panel. These colored 3D projections used with the Van-der-Waals display mode can help to detect residue patches with high conservation, hydrophobicity or SURFMAP scores on the surface of each MAX model. References: Dong R, Pan S, Peng Z, Zhang Y, Yang J. mTM-align: a server for fast protein structure database search and multiple protein structure alignment. Nucleic Acids Res. 2018 Jul 2;46(W1):W380-W386. doi: 10.1093/nar/gky430. Frishman D, Argos P. Knowledge-based protein secondary structure assignment. Proteins. 1995 Dec;23(4):566-79. doi: 10.1002/prot.340230412. Le Naour-Vernet M, Charriat F, Gracy J, Cros-Arteil S, Ravel S, Veillet F, et al. Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae. Seidl MF, editor. PLOS Pathog. 2023;19: e1011294. doi:10.1371/journal.ppat.1011294 Ponnuswamy PK, Prabhakaran M, Manavalan P. Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins. Biochim Biophys Acta. 1980 Jun 26;623(2):301-16. doi: 10.1016/0005-2795(80)90258-5. Schweke H, Mucchielli MH, Chevrollier N, Gosset S, Lopes A. SURFMAP: A Software for Mapping in Two Dimensions Protein Surface Features. J Chem Inf Model. 2022 Apr 11;62(7):1595-1601. doi: 10.1021/acs.jcim.1c01269. Seong K, Krasileva KV. Computational Structural Genomics Unravels Common Folds and Novel Families in the Secretome of Fungal Phytopathogen Magnaporthe oryzae. Mol Plant Microbe Interact. 2021. doi: 10.1094/MPMI-03-21-0071-R. Seong K, Krasileva KV. Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses. Nat Microbiol. 2023;8: 174–187. doi:10.1038/s41564-022-01287-6 Yan X, Tang B, Ryder LS, MacLean D, Were VM, Eseola AB, Cruz-Mireles N, Ma W, Foster AJ, Osés-Ruiz M, Talbot NJ. The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors. Plant Cell. 2023 Apr 20;35(5):1360-1385. doi: 10.1093/plcell/koad036.

The corresponding Modeller models from our previous study (Le Naour-Vernet et al. 2023) are available here